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  5. Solyc11g062010.2.1

Solyc11g062010.2.1 (Solyc11g062010.2)


Aliases : Solyc11g062010.2

Description : 28.1 DNA.synthesis/chromatin structure Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation. Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms differs in juvenile and in adult tissues. The C-terminal domain is not required for activity. SPLAYED (SYD)


Gene families : OG_01_0000140 (Gene family) Phylogenetic Tree(s): OG0000140_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc11g062010.2.1
Cluster HCCA cluster: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.2 Gene family
AT2G13370 CHR5 chromatin remodeling 5 0.24 Gene family
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.04 Gene family
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.32 Gene family
AT3G06010 ATCHR12 Homeotic gene regulator 0.06 Gene family
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.24 Gene family
Cpa|evm.model.tig00000128.11 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.02 Gene family
Cpa|evm.model.tig00000217.25 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.01 Gene family
Cpa|evm.model.tig00000983.26 No alias 28.1 DNA.synthesis/chromatin structure chromatin... 0.03 Gene family
Cpa|evm.model.tig00021623.13 No alias No description available 0.03 Gene family
Cre03.g179300 No alias 28.1 DNA.synthesis/chromatin structure chromatin... 0.05 Gene family
Cre08.g377200 No alias No description available 0.03 Gene family
Cre09.g390000 No alias 28.1 DNA.synthesis/chromatin structure chromatin... 0.01 Gene family
Cre12.g508150 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.03 Gene family
Cre12.g537671 No alias 28.1 DNA.synthesis/chromatin structure chromatin... 0.05 Gene family
Cre16.g647602 No alias No description available 0.02 Gene family
GSVIVT01012117001 No alias 28.1 DNA.synthesis/chromatin structure chromatin... 0.23 Gene family
GSVIVT01017791001 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.06 Gene family
GSVIVT01017820001 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.16 Gene family
GSVIVT01025216001 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.14 Gene family
GSVIVT01035901001 No alias No description available 0.03 Gene family
GSVIVT01037235001 No alias 28.1 DNA.synthesis/chromatin structure chromatin... 0.17 Gene family
LOC_Os02g02050 Os02g0110700 27.3.44 RNA.regulation of transcription.Chromatin... 0.03 Gene family
LOC_Os05g05230 Os05g0144300 27.3.44 RNA.regulation of transcription.Chromatin... 0.12 Gene family
LOC_Os05g05780 Os05g0150300 27.3.44 RNA.regulation of transcription.Chromatin... 0.02 Gene family
LOC_Os06g01320 Os06g0102800,... 27.3.44 RNA.regulation of transcription.Chromatin... 0.07 Gene family
LOC_Os06g08480 Os06g0183800 No description available 0.05 Gene family
LOC_Os07g31450 Os07g0497100 28.1 DNA.synthesis/chromatin structure chromatin... 0.16 Gene family
LOC_Os07g46590 Os07g0660200 28.1 DNA.synthesis/chromatin structure chromatin... 0.01 Gene family
MA_102992g0020 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.02 Gene family
MA_10429361g0010 No alias 28.1 DNA.synthesis/chromatin structure chromatin... 0.04 Gene family
MA_141135g0010 No alias No description available 0.04 Gene family
MA_77097g0010 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.02 Gene family
MA_8926002g0010 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.1 Gene family
Smo102849 PACid_15409196 No description available 0.02 Gene family
Smo130534 PACid_15422579 28.1 DNA.synthesis/chromatin structure chromatin... 0.04 Gene family
Smo155996 PACid_15410236 No description available 0.03 Gene family
Smo177985 PACid_15407971 No description available 0.07 Gene family
Smo440203 PACid_15403255 27.3.44 RNA.regulation of transcription.Chromatin... 0.03 Gene family
Smo440815 PACid_15407851 28.1 DNA.synthesis/chromatin structure chromatin... 0.06 Gene family
Zm00001d006428 GRMZM2G181158,... 28.1 DNA.synthesis/chromatin structure chromatin... 0.3 Gene family
Zm00001d007089 GRMZM2G141258 28.1 DNA.synthesis/chromatin structure chromatin... 0.12 Gene family
Zm00001d021541 GRMZM2G316191 28.1 DNA.synthesis/chromatin structure chromatin... 0.3 Gene family
Zm00001d022405 GRMZM2G010342 28.1 DNA.synthesis/chromatin structure chromatin... 0.03 Gene family
Zm00001d024816 GRMZM2G097289,... 27.3.44 RNA.regulation of transcription.Chromatin... 0.07 Gene family
Zm00001d045109 GRMZM2G409865,... No description available 0.21 Gene family
Zm00001d045635 GRMZM2G472428 27.3.44 RNA.regulation of transcription.Chromatin... 0.2 Gene family

Type GO Term Name Evidence Source
MF GO:0042393 histone binding IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000330 SNF2_N 864 1114
IPR001650 Helicase_C 1140 1230
IPR029295 SnAC 1361 1455
No external refs found!