Adi_g025518 (PUB13, ATPUB13)

Aliases : PUB13, ATPUB13

Description : E3 ubiquitin ligase & original description: none

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g025518

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00267930	evm_27.TU.AmTr_v1...	U-box domain-containing protein 19 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AMTR_s00007p00217990	evm_27.TU.AmTr_v1...	U-box domain-containing protein 16 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AMTR_s00086p00031680	evm_27.TU.AmTr_v1...	U-box domain-containing protein 4 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AMTR_s00153p00035720	ATPUB17, PUB17,...	U-box domain-containing protein 1 OS=Medicago truncatula	0.03	OrthoFinder output from all 47 species
AT4G21350	PUB8, B80	plant U-box 8	0.02	OrthoFinder output from all 47 species
Aev_g01975	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g02192	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g04410	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g05074	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene28347.t1	PUB14, ATPUB14,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g00725	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g06960	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g31838	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.07G010000.1	PUB13, ATPUB13,...	E3 ubiquitin ligase & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.08G025000.1	Ceric.08G025000	not classified & original description: pacid=50638405...	0.03	OrthoFinder output from all 47 species
Ceric.10G010300.1	ATPUB17, PUB17,...	not classified & original description: pacid=50611933...	0.03	OrthoFinder output from all 47 species
Ceric.1Z057600.1	PUB13, ATPUB13,...	E3 ubiquitin ligase & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g08480	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g01773	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g26575	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g26730	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g13215	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01032778001	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula	0.02	OrthoFinder output from all 47 species
LOC_Os08g04470.1	PUB8, B80, LOC_Os08g04470	U-box domain-containing protein 8 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Len_g16436	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Len_g41496	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
MA_84321g0010	PUB13, ATPUB13	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Msp_g08607	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g03090	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g14682	ATPUB45, PUB45	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g05165	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g26740	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005097	No alias	not classified & original description: CDS=1-2154	0.02	OrthoFinder output from all 47 species
Sam_g19747	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g25175	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Smo415326	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula	0.02	OrthoFinder output from all 47 species
Spa_g11287	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g11886	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g25117	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g54242	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e014377_P001	ATPUB17, PUB17,...	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species
Zm00001e014566_P002	PUB9, ATPUB9,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Zm00001e018578_P001	Zm00001e018578	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e031915_P001	Zm00001e031915	U-box domain-containing protein 16 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	408	446
IPR000225	Armadillo	532	569
IPR000225	Armadillo	490	528
IPR000225	Armadillo	449	487
IPR003613	Ubox_domain	292	362

External Links

No external refs found!

Adi_g025518 (PUB13, ATPUB13)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation