1. Home
  2. Species
  3. Equisetum hyemale
  4. Sequence
  5. Ehy_g10263

Ehy_g10263 (PWP2, ATPWP2)


Aliases : PWP2, ATPWP2

Description : SSU processome assembly factor *(UTP1/PWP2) & original description: none


Gene families : OG0005463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005463_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g10263
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00059990 PWP2, ATPWP2,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
AT1G15440 PWP2, ATPWP2 periodic tryptophan protein 2 0.03 OrthoFinder output from all 47 species
Aev_g07968 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.05 OrthoFinder output from all 47 species
Als_g14188 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0152.g053425 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.04 OrthoFinder output from all 47 species
Cba_g01301 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.03 OrthoFinder output from all 47 species
Ceric.39G059700.1 PWP2, ATPWP2,... SSU processome assembly factor *(UTP1/PWP2) & original... 0.05 OrthoFinder output from all 47 species
Cre06.g254150 PWP2, ATPWP2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Dcu_g01964 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.05 OrthoFinder output from all 47 species
Gb_23048 PWP2, ATPWP2 SSU processome assembly factor (UTP1/PWP2) 0.02 OrthoFinder output from all 47 species
LOC_Os05g44320.1 PWP2, ATPWP2,... SSU processome assembly factor (UTP1/PWP2) 0.04 OrthoFinder output from all 47 species
Lfl_g05701 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.02 OrthoFinder output from all 47 species
Mp1g17900.1 PWP2, ATPWP2 SSU processome assembly factor (UTP1/PWP2) 0.03 OrthoFinder output from all 47 species
Ore_g35917 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.03 OrthoFinder output from all 47 species
Spa_g18868 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
InterPro domains Description Start Stop
IPR007148 SSU_processome_Utp12 833 937
IPR001680 WD40_repeat 599 630
IPR001680 WD40_repeat 466 502
IPR001680 WD40_repeat 135 168
IPR001680 WD40_repeat 552 588
IPR001680 WD40_repeat 429 460
No external refs found!