Ehy_g10036 (SNL3, ATSIN3, SIN3)

Aliases : SNL3, ATSIN3, SIN3

Description : component *(SNL) of histone deacetylase machineries & original description: none

Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ehy_g10036

Target	Alias	Description	ECC score	Gene Family Method
AT1G59890	SNL5	SIN3-like 5	0.03	OrthoFinder output from all 47 species
AT3G01320	SNL1	SIN3-like 1	0.03	OrthoFinder output from all 47 species
Adi_g057345	SNL2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g17667	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Als_g19060	SNL4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g22302	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Als_g52098	SNL2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g27014	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Aop_g00817	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Azfi_s0008.g011658	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Ceric.02G103500.1	SNL3, ATSIN3,...	component *(SNL) of histone deacetylase machineries &...	0.05	OrthoFinder output from all 47 species
Ceric.31G072300.1	SNL4, Ceric.31G072300	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Dcu_g18942	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
LOC_Os05g01020.2	SNL4, LOC_Os05g01020	component SNL of histone deacetylase machineries	0.02	OrthoFinder output from all 47 species
MA_8638132g0010	SNL4	Paired amphipathic helix protein Sin3-like 3...	0.02	OrthoFinder output from all 47 species
Mp7g11300.1	SNL5	Paired amphipathic helix protein Sin3-like 2...	0.02	OrthoFinder output from all 47 species
Sam_g14557	No alias	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Sam_g25571	No alias	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Sam_g29972	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g35727	No alias	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Smo440352	SNL4	Chromatin organisation.histone modifications.histone...	0.04	OrthoFinder output from all 47 species
Spa_g18268	SNL4	component *(SNL) of histone deacetylase machineries &...	0.05	OrthoFinder output from all 47 species
Zm00001e017111_P002	SNL4, Zm00001e017111	component SNL of histone deacetylase machineries	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013194	HDAC_interact_dom	526	615
IPR031693	Sin3_C	1189	1435
IPR003822	PAH	145	189
IPR003822	PAH	366	410
IPR003822	PAH	59	103

External Links

No external refs found!

Ehy_g10036 (SNL3, ATSIN3, SIN3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation