Adi_g022447 (DCL1, CAF, EMB76,...)

Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1

Description : endoribonuclease (DCL4) of transacting siRNA pathway & original description: none

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g022447

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00252700	ATRTL2, RTL2,...	RNA biosynthesis.siRNA biogenesis.RTL2 ribonuclease-III...	0.02	OrthoFinder output from all 47 species
AT3G03300	ATDCL2, DCL2	dicer-like 2	0.02	OrthoFinder output from all 47 species
Adi_g068389	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g18302	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.04	OrthoFinder output from all 47 species
Ala_g21964	DCL1, CAF,...	endoribonuclease *(DCL3) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene32282.t1	DCL4, ATDCL4,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.1Z315900.1	DCL4, ATDCL4,...	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.01	OrthoFinder output from all 47 species
Cre02.g141000	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Dcu_g36083	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.03	OrthoFinder output from all 47 species
Gb_34256	DCL4, ATDCL4	endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1...	0.02	OrthoFinder output from all 47 species
LOC_Os03g02970.1	DCL1, CAF,...	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.04	OrthoFinder output from all 47 species
MA_10436812g0020	DCL4, ATDCL4	Dicer-like protein 4 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_10437243g0010	DCL1, CAF,...	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.02	OrthoFinder output from all 47 species
MA_10437243g0020	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_523069g0010	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Msp_g44227	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Nbi_g07904	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Nbi_g15966	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ore_g16091	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.02	OrthoFinder output from all 47 species
Ore_g37606	ATDCL3, DCL3	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008352	ATDCL3, DCL3	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.03	OrthoFinder output from all 47 species
Smo74321	DCL4, ATDCL4	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.02	OrthoFinder output from all 47 species
Zm00001e000158_P001	DCL1, CAF,...	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.01	OrthoFinder output from all 47 species
Zm00001e012492_P003	ATDCL2, DCL2,...	Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species
Zm00001e018890_P004	ATDCL3, DCL3,...	endoribonuclease (DCL3)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR014720	dsRBD_dom	1687	1756
IPR003100	PAZ_dom	924	1053
IPR001650	Helicase_C	415	528
IPR000999	RNase_III_dom	1096	1232
IPR000999	RNase_III_dom	1326	1437
IPR006935	Helicase/UvrB_N	68	222

External Links

No external refs found!

Adi_g022447 (DCL1, CAF, EMB76,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation