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  5. Adi_g022189

Adi_g022189 (XPB1, ATXPB1)


Aliases : XPB1, ATXPB1

Description : component *(SSL2/XPB) of TFIIh basal transcription factor complex & original description: none


Gene families : OG0003291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003291_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g022189

Target Alias Description ECC score Gene Family Method Actions
Ceric.07G025300.1 XPB1, ATXPB1,... component *(SSL2/XPB) of TFIIh basal transcription... 0.02 OrthoFinder output from all 47 species
LOC_Os01g49680.1 XPB1, ATXPB1,... subunit SSL2/XPB of multifunctional TFIIh complex.... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011855 XPB1, ATXPB1 not classified & original description: CDS=1-1140 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004556 alpha-amylase activity IEP HCCA
MF GO:0004852 uroporphyrinogen-III synthase activity IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR006935 Helicase/UvrB_N 287 443
IPR032438 ERCC3_RAD25_C 469 718
IPR032830 XPB/Ssl2_N 74 197
No external refs found!