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  5. Adi_g021727

Adi_g021727 (CHR20, ATRX)


Aliases : CHR20, ATRX

Description : chromatin remodeling factor *(ATRX) & original description: none


Gene families : OG0003866 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003866_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Adi_g021727

Target Alias Description ECC score Gene Family Method Actions
Ala_g21446 CHR20, ATRX not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16593 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g13390 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09035 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene40157.t1 CHR20, ATRX,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G086900.1 CHR20, ATRX,... chromatin remodeling factor *(ATRX) & original... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021760.3 CHR20, ATRX Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g32485 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g34455 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09273 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01023393001 CHR20, ATRX Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Gb_33142 CHR20, ATRX chromatin remodeling factor (ATRX) 0.01 OrthoFinder output from all 47 species
LOC_Os10g31970.1 CHR20, ATRX,... chromatin remodeling factor (ATRX) 0.02 OrthoFinder output from all 47 species
Lfl_g03487 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.03 OrthoFinder output from all 47 species
MA_6938949g0010 CHR20, ATRX Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp5g21000.1 CHR20, ATRX chromatin remodeling factor (ATRX) 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000167 CHR20, ATRX chromatin remodeling factor *(ATRX) & original... 0.03 OrthoFinder output from all 47 species
Sam_g08109 No alias chromatin remodeling factor *(ATRX) & original description: none 0.02 OrthoFinder output from all 47 species
Smo441095 CHR20, ATRX Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Solyc04g050150.4.1 CHR20, ATRX,... chromatin remodeling factor (ATRX) 0.03 OrthoFinder output from all 47 species
Solyc04g050160.4.1 CHR20, ATRX,... Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 1101 1224
IPR000330 SNF2_N 696 1016
IPR041430 ADD_ATRX 476 520
No external refs found!