Solyc11g008390.2.1 (Solyc11g008390.2)


Aliases : Solyc11g008390.2

Description : 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. plant U-box 14 (PUB14)


Gene families : OG_01_0001127 (Gene family) Phylogenetic Tree(s): OG0001127_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc11g008390.2.1
Cluster HCCA cluster: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AT3G46510 PUB13, ATPUB13 plant U-box 13 0.02 Gene family
GSVIVT01016225001 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.04 Gene family
LOC_Os02g49950 Os02g0732200 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING ARM... 0.03 Gene family
LOC_Os03g16824 Os03g0275900 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.04 Gene family
LOC_Os06g01304 Os06g0102700,... 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
LOC_Os12g38210 Os12g0570000 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.04 Gene family
Smo181353 PACid_15415478 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003613 Ubox_domain 245 315
IPR000225 Armadillo 455 493
IPR000225 Armadillo 372 411
No external refs found!