AMTR_s00155p00082980 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00155.56

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor


Gene families : OG_01_0000080 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000080_tree ,
OG_02_0001322 (LandPlants) Phylogenetic Tree(s): OG_02_0001322_tree ,
OG_03_0001040 (SeedPlants) Phylogenetic Tree(s): OG_03_0001040_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00155p00082980
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020904.93 No alias No description available 0.01 Archaeplastida
Gb_39686 No alias transcription factor (ARF) 0.02 Archaeplastida
LOC_Os05g48870.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os11g32110.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os12g41950.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Mp1g12750.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Mp2g02890.1 No alias Auxin response factor 19 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Pp3c14_16990V3.1 No alias auxin response factor 6 0.02 Archaeplastida
Pp3c1_40270V3.1 No alias auxin response factor 6 0.02 Archaeplastida
Pp3c4_12970V3.1 No alias auxin response factor 16 0.03 Archaeplastida
Pp3c5_9420V3.1 No alias auxin response factor 2 0.02 Archaeplastida
Solyc11g013480.3.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc11g069190.2.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e003229_P002 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e006577_P003 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e013639_P001 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e018126_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e020205_P004 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e032135_P002 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e032423_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e041910_P003 No alias transcription factor (ARF) 0.04 Archaeplastida
GSVIVT01025691001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 LandPlants
Pp3c4_12970V3.1 No alias auxin response factor 16 0.03 LandPlants
Solyc11g013470.1.1 No alias no hits & (original description: none) 0.02 LandPlants
MA_137387g0010 No alias no hits & (original description: none) 0.02 SeedPlants
Solyc11g013470.1.1 No alias no hits & (original description: none) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 147 248
IPR003311 AUX_IAA 699 784
IPR010525 Auxin_resp 307 390
No external refs found!