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  5. Adi_g020093

Adi_g020093 (GTA02, GTA2)


Aliases : GTA02, GTA2

Description : component *(SPT5) of SPT4/5 transcription elongation factor complex & original description: none


Gene families : OG0002736 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002736_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g020093

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00250180 GTA02, GTA2,... RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
AT4G08350 GTA02, GTA2 global transcription factor group A2 0.02 OrthoFinder output from all 47 species
Ala_g11309 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.08 OrthoFinder output from all 47 species
Aob_g14168 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
Aop_g07106 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.04 OrthoFinder output from all 47 species
Azfi_s0078.g038202 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
Dcu_g08962 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.11 OrthoFinder output from all 47 species
Ehy_g18831 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.02 OrthoFinder output from all 47 species
GSVIVT01010022001 GTA02, GTA2 RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
GSVIVT01016203001 SPT5L, KTF1 Chromatin organisation.DNA methylation.canonical... 0.04 OrthoFinder output from all 47 species
Gb_37075 GTA02, GTA2 RNA polymerase-V auxiliary factor (KTF1/SPT5L).... 0.03 OrthoFinder output from all 47 species
LOC_Os05g43060.1 SPT5L, KTF1,... RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.04 OrthoFinder output from all 47 species
LOC_Os06g10620.1 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.05 OrthoFinder output from all 47 species
Len_g12137 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.06 OrthoFinder output from all 47 species
Lfl_g05703 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.04 OrthoFinder output from all 47 species
MA_10434986g0010 GTA02, GTA2 RNA polymerase-V auxiliary factor (KTF1/SPT5L).... 0.05 OrthoFinder output from all 47 species
Ore_g19192 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.07 OrthoFinder output from all 47 species
Ppi_g52300 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.04 OrthoFinder output from all 47 species
Solyc04g064700.4.1 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.02 OrthoFinder output from all 47 species
Zm00001e027389_P004 SPT5L, KTF1,... RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.03 OrthoFinder output from all 47 species
Zm00001e030789_P001 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.04 OrthoFinder output from all 47 species
Zm00001e032078_P001 SPT5L, KTF1,... RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.02 OrthoFinder output from all 47 species
Zm00001e036210_P001 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR022581 Spt5_N 44 162
IPR005100 NGN-domain 168 252
IPR005824 KOW 468 509
No external refs found!