1. Home
  2. Species
  3. Actinostachys digitata
  4. Sequence
  5. Adi_g020058

Adi_g020058


Description : not classified & original description: none


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g020058

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00099690 RAP2.6,... Ethylene-responsive transcription factor ERF110... 0.03 OrthoFinder output from all 47 species
AT5G05410 DREB2A, DREB2 DRE-binding protein 2A 0.02 OrthoFinder output from all 47 species
AT5G18450 No alias Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
Cba_g05027 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g18800 AtERF48, DREB2C subgroup ERF-IV/DREB2 transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cre06.g275500 RAP2.2 No description available 0.01 OrthoFinder output from all 47 species
Cre16.g674890 ERF72, EBP, ATEBP, RAP2.3 No description available 0.01 OrthoFinder output from all 47 species
Dac_g07566 DEAR1, CEJ1, ATERF#011 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16478 No alias subgroup ERF-I transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g29688 No alias subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Gb_07226 RAP2.12 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
LOC_Os01g07120.1 DREB2A, DREB2,... transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
LOC_Os02g54160.2 RAP2.2, LOC_Os02g54160 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
LOC_Os05g27930.1 DREB2A, DREB2,... transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
MA_10209922g0010 No alias transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
MA_9068995g0010 No alias Ethylene-responsive transcription factor ERF016... 0.01 OrthoFinder output from all 47 species
Mp5g11100.1 ATERF4, RAP2.5,... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g09350.1 ERF-1, ATERF-1 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Ore_g02257 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32986 No alias subgroup ERF-I transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g31214 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Pir_g65439 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pp3c11_13860V3.1 ATERF-9, ERF9,... ethylene responsive element binding factor 4 0.01 OrthoFinder output from all 47 species
Solyc03g117130.3.1 Solyc03g117130 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Spa_g22183 CRF4 subgroup ERF-VI transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g56350 No alias subgroup ERF-III transcription factor & original... 0.01 OrthoFinder output from all 47 species
Tin_g00486 ERF7, ATERF7, ATERF-7 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Zm00001e016064_P001 RAP2.2, Zm00001e016064 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Zm00001e036260_P001 RAP2.12, Zm00001e036260 transcription factor (ERF) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
MF GO:0004096 catalase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006098 pentose-phosphate shunt IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006740 NADPH regeneration IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
BP GO:0051156 glucose 6-phosphate metabolic process IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
CC GO:0070652 HAUS complex IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
InterPro domains Description Start Stop
IPR025927 Potential_DNA-bd 313 375
IPR003340 B3_DNA-bd 51 128
No external refs found!