• Species
  • Tools
    • Expression Profiles
    • Compare profiles
    • Create heatmap
    • Export expression levels
    • Expression Specificity
    • Compare specificities
    • Find specific profiles
    • Co-expression Networks
    • Create custom network
    • Find enriched clusters
  • Search
    • Search (advanced)
    • BLAST
  • Help
    • Tutorial
    • Contact

Jump to ...

  • Profile
  • Networks
  • ECC
  • Annotation
  • Links
  1. Home
  2. Species
  3. Actinostachys digitata
  4. Sequence
  5. Adi_g019966

Adi_g019966 (BUM1, SHL, STM, WAM, WAM1, BUM)


Aliases : BUM1, SHL, STM, WAM, WAM1, BUM

Description : KNOX-type transcription factor & original description: none


Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)

Expression Profile


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Co-expression Networks

Type Description Actions
Neighborhood HRR: Adi_g019966

Expression Context Conservation (ECC)

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00085p00165180 KNAT6, KNAT6L,... RNA biosynthesis.transcriptional activation.HB... 0.07 OrthoFinder output from all 47 species
AT1G23380 KNAT6, KNAT6L, KNAT6S KNOTTED1-like homeobox gene 6 0.03 OrthoFinder output from all 47 species
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.02 OrthoFinder output from all 47 species
AT1G70510 KNAT2, ATK1 KNOTTED-like from Arabidopsis thaliana 2 0.03 OrthoFinder output from all 47 species
AT5G25220 KNAT3 KNOTTED1-like homeobox gene 3 0.04 OrthoFinder output from all 47 species
Adi_g058538 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g51107 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08926 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49532.t1 BP, BP1, KNAT1,... KNOX-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0350.g066569 BUM1, SHL, STM,... KNOX-type transcription factor & original description: CDS=1-1488 0.03 OrthoFinder output from all 47 species
Cba_g32460 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G064800.1 BUM1, SHL, STM,... KNOX-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.10G031700.1 KNAT3, Ceric.10G031700 KNOX-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.20G046300.1 BUM1, SHL, STM,... KNOX-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g03334 KNAT3 KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g10872 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g27227 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g06109 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01004811001 BUM1, SHL, STM,... RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
GSVIVT01009273001 BP, BP1, KNAT1 RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
GSVIVT01013790001 KNAT6, KNAT6L, KNAT6S RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
GSVIVT01031241001 KNAT6, KNAT6L, KNAT6S RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
Gb_00572 BP, BP1, KNAT1 transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
LOC_Os01g19694.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.04 OrthoFinder output from all 47 species
LOC_Os03g03164.2 KNAT7, IXR11,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
LOC_Os03g51690.2 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
LOC_Os05g03884.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Len_g56773 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17777 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19225 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g24721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25139 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25529 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c19_5610V3.1 Pp3c19_5610 No annotation 0.02 OrthoFinder output from all 47 species
Ppi_g10499 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15325 KNAT4 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005308 BUM1, SHL, STM,... KNOX-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007633 KNAT7, IXR11 not classified & original description: CDS=1-1266 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0115.g020964 BUM1, SHL, STM,... KNOX-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0142.g022803 No alias not classified & original description: CDS=20-451 0.02 OrthoFinder output from all 47 species
Sam_g01264 No alias KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27266 No alias KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40671 No alias KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo159366 BP, BP1, KNAT1 RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
Solyc02g081120.4.1 BUM1, SHL, STM,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Solyc12g010410.3.1 KNAT4, Solyc12g010410 transcription factor (KNOX) 0.05 OrthoFinder output from all 47 species
Spa_g24646 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45614 KNAT4 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45916 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005170_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Zm00001e005545_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Zm00001e005825_P002 BP, BP1, KNAT1,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Zm00001e011538_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Zm00001e017489_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.05 OrthoFinder output from all 47 species
Zm00001e027562_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Zm00001e032761_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Zm00001e039044_P001 KNAT7, IXR11,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species

Functional Annotation

  • GO
  • Predicted GO
  • InterPro
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function None Extended
MF GO:0003676 nucleic acid binding None Extended
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005488 binding None Extended
CC GO:0005575 cellular_component None Extended
CC GO:0005634 nucleus IEA Interproscan
CC GO:0043226 organelle None Extended
CC GO:0043227 membrane-bounded organelle None Extended
CC GO:0043229 intracellular organelle None Extended
CC GO:0043231 intracellular membrane-bounded organelle None Extended
MF GO:0097159 organic cyclic compound binding None Extended
CC GO:0110165 cellular anatomical entity None Extended
MF GO:1901363 heterocyclic compound binding None Extended
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
InterPro domains Description Start Stop
IPR005541 KNOX2 220 265
IPR005539 ELK_dom 345 364
IPR005540 KNOX1 169 206
External Links
No external refs found!
CoNekT
About
Contact
Disclaimer
Privacy policy

Loading ... please wait ...