MA_10432580g0010


Description : transcription factor (ARF)


Gene families : OG_01_0000080 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000080_tree ,
OG_02_0000395 (LandPlants) Phylogenetic Tree(s): OG_02_0000395_tree ,
OG_03_0002311 (SeedPlants) Phylogenetic Tree(s): OG_03_0002311_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10432580g0010
Cluster HCCA: Cluster_284

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00200760 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
AMTR_s00021p00221770 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
AMTR_s00029p00157690 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.04 Archaeplastida
AT1G30330 ARF6 auxin response factor 6 0.03 Archaeplastida
AT1G59750 ARF1 auxin response factor 1 0.05 Archaeplastida
AT2G46530 ARF11 auxin response factor 11 0.03 Archaeplastida
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.05 Archaeplastida
GSVIVT01008639001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01021552001 No alias RNA biosynthesis.transcriptional activation.B3... 0.06 Archaeplastida
GSVIVT01021553001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
GSVIVT01023149001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
Gb_12414 No alias transcription factor (ARF) 0.02 Archaeplastida
Gb_23186 No alias transcription factor (ARF) 0.05 Archaeplastida
Gb_23328 No alias transcription factor (ARF) 0.02 Archaeplastida
Gb_39686 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os01g70270.1 No alias transcription factor (ARF) 0.02 Archaeplastida
LOC_Os02g41800.1 No alias transcription factor (ARF) 0.02 Archaeplastida
LOC_Os04g36054.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os04g56850.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os05g48870.1 No alias transcription factor (ARF) 0.02 Archaeplastida
LOC_Os06g47150.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os11g32110.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os12g29520.1 No alias transcription factor (ARF) 0.04 Archaeplastida
MA_10022392g0010 No alias transcription factor (ARF) 0.03 Archaeplastida
Mp2g02890.1 No alias Auxin response factor 19 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Pp3c13_4720V3.1 No alias auxin response factor 6 0.03 Archaeplastida
Pp3c4_12970V3.1 No alias auxin response factor 16 0.02 Archaeplastida
Pp3c5_9420V3.1 No alias auxin response factor 2 0.03 Archaeplastida
Solyc01g096070.3.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Solyc02g077560.3.1 No alias transcription factor (ARF) 0.05 Archaeplastida
Solyc05g047460.3.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Solyc08g008380.4.1 No alias transcription factor (ARF) 0.05 Archaeplastida
Solyc11g069190.2.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e006640_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e018126_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e021527_P006 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e028396_P001 No alias transcription factor (ARF) 0.05 Archaeplastida
AMTR_s00021p00200760 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 LandPlants
AMTR_s00021p00221770 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 LandPlants
AT1G59750 ARF1 auxin response factor 1 0.03 LandPlants
AT2G46530 ARF11 auxin response factor 11 0.03 LandPlants
GSVIVT01023149001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 LandPlants
GSVIVT01025159001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 LandPlants
Gb_12414 No alias transcription factor (ARF) 0.02 LandPlants
Gb_23186 No alias transcription factor (ARF) 0.05 LandPlants
Gb_23328 No alias transcription factor (ARF) 0.02 LandPlants
LOC_Os01g70270.1 No alias transcription factor (ARF) 0.02 LandPlants
LOC_Os04g36054.1 No alias transcription factor (ARF) 0.04 LandPlants
LOC_Os05g48870.1 No alias transcription factor (ARF) 0.02 LandPlants
LOC_Os11g32110.1 No alias transcription factor (ARF) 0.03 LandPlants
Pp3c5_9420V3.1 No alias auxin response factor 2 0.03 LandPlants
Solyc01g096070.3.1 No alias transcription factor (ARF) 0.02 LandPlants
Solyc02g077560.3.1 No alias transcription factor (ARF) 0.05 LandPlants
Solyc08g008380.4.1 No alias transcription factor (ARF) 0.04 LandPlants
Solyc11g069190.2.1 No alias transcription factor (ARF) 0.02 LandPlants
Zm00001e014833_P002 No alias transcription factor (ARF) 0.03 LandPlants
Zm00001e020205_P004 No alias transcription factor (ARF) 0.03 LandPlants
Zm00001e021527_P006 No alias transcription factor (ARF) 0.04 LandPlants
Zm00001e028396_P001 No alias transcription factor (ARF) 0.03 LandPlants
Gb_12414 No alias transcription factor (ARF) 0.02 SeedPlants
Gb_23186 No alias transcription factor (ARF) 0.03 SeedPlants
Gb_23328 No alias transcription factor (ARF) 0.02 SeedPlants
LOC_Os01g70270.1 No alias transcription factor (ARF) 0.02 SeedPlants
LOC_Os11g32110.1 No alias transcription factor (ARF) 0.03 SeedPlants
LOC_Os12g29520.1 No alias transcription factor (ARF) 0.02 SeedPlants
Solyc03g118290.3.1 No alias transcription factor (ARF) 0.02 SeedPlants
Zm00001e021527_P006 No alias transcription factor (ARF) 0.04 SeedPlants
Zm00001e028396_P001 No alias transcription factor (ARF) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010525 Auxin_resp 287 369
IPR003340 B3_DNA-bd 161 262
IPR033389 AUX/IAA_dom 804 850
No external refs found!