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  5. Adi_g016371

Adi_g016371


Description : not classified & original description: none


Gene families : OG0005967 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005967_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g016371
Cluster HCCA: Cluster_371

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.02 OrthoFinder output from all 47 species
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Aev_g01555 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04893 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g10911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21865 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g12627 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06462 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g20213 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
GSVIVT01014050001 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
LOC_Os09g25550.1 LOC_Os09g25550 Pentatricopeptide repeat-containing protein At4g30825,... 0.02 OrthoFinder output from all 47 species
Len_g20786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
Nbi_g19610 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g36090 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g09709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012097 No alias not classified & original description: CDS=661-1995 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015623 No alias not classified & original description: CDS=1-2238 0.02 OrthoFinder output from all 47 species
Sam_g13761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g52939 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Zm00001e040095_P002 Zm00001e040095 Pentatricopeptide repeat-containing protein At4g30825,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 353 393
IPR002885 Pentatricopeptide_repeat 407 462
IPR002885 Pentatricopeptide_repeat 791 848
IPR002885 Pentatricopeptide_repeat 561 585
IPR002885 Pentatricopeptide_repeat 733 756
IPR002885 Pentatricopeptide_repeat 313 342
IPR002885 Pentatricopeptide_repeat 665 690
IPR002885 Pentatricopeptide_repeat 873 916
No external refs found!