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  5. Ehy_g09068

Ehy_g09068 (PTB3)


Aliases : PTB3

Description : not classified & original description: none


Gene families : OG0002613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002613_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g09068
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AT1G43190 PTB3 polypyrimidine tract-binding protein 3 0.02 OrthoFinder output from all 47 species
Adi_g055983 PTB3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g08986 PTB3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0144.g051569 PTB3 not classified & original description: CDS=169-1521 0.03 OrthoFinder output from all 47 species
Cba_g25040 PTB3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g10417 PTB3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04628 PTB3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os05g36120.1 PTB3, LOC_Os05g36120 Polypyrimidine tract-binding protein homolog 3... 0.03 OrthoFinder output from all 47 species
Len_g03792 PTB3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g21460.1 PTB3 Polypyrimidine tract-binding protein homolog 3... 0.03 OrthoFinder output from all 47 species
Pir_g05308 PTB3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g11687 PTB3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e031781_P005 PTB3, Zm00001e031781 Polypyrimidine tract-binding protein homolog 3... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0051011 microtubule minus-end binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 387 451
IPR021790 PTBP1-like_RRM2 100 176
No external refs found!