Solyc10g080220.2.1 (Solyc10g080220.2)

Aliases : Solyc10g080220.2

Description : 35.1.5 not ontology.pentatricopeptide (PPR) repeat-containing protein Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity. CHLORORESPIRATORY REDUCTION28 (CRR28)

Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc10g080220.2.1
Cluster HCCA cluster: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AT1G05750 PDE247, CLB19 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT1G26900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032867 DYW_dom 474 593
IPR005516 Remorin_C 649 733
IPR002885 Pentatricopeptide_repeat 290 316
IPR002885 Pentatricopeptide_repeat 261 283
IPR002885 Pentatricopeptide_repeat 375 399
IPR002885 Pentatricopeptide_repeat 344 369
IPR002885 Pentatricopeptide_repeat 185 233
No external refs found!