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  5. Adi_g012564

Adi_g012564 (At-SR34a, SR34a, SRp34a)


Aliases : At-SR34a, SR34a, SRp34a

Description : RNA splicing factor *(SR30/34) & original description: none


Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g012564

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00100p00047650 At-SR34a, SR34a,... RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
AT3G49430 At-SR34a, SR34a, SRp34a SER/ARG-rich protein 34A 0.03 OrthoFinder output from all 47 species
Als_g12032 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0241.g059740 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description:... 0.02 OrthoFinder output from all 47 species
Azfi_s0276.g061442 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description:... 0.04 OrthoFinder output from all 47 species
Cre01.g026450 At-SR34, SRP34,... RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Dac_g00635 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03721 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031132001 SR30, ATSRP30, At-SR30 RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Len_g48587 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
MA_11621g0010 At-SR34a, SR34a, SRp34a SR30/34 RNA splicing factor 0.04 OrthoFinder output from all 47 species
Nbi_g02812 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g31228 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0081.g018025 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: CDS=14-880 0.04 OrthoFinder output from all 47 species
Solyc03g082380.4.1 At-SR34a, SR34a,... SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Solyc09g075090.1.1 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Spa_g17256 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e031418_P004 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Zm00001e038219_P006 SR30, ATSRP30,... SR30/34 RNA splicing factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 8 72
No external refs found!