Solyc10g080040.2.1 (Solyc10g080040.2)

Aliases : Solyc10g080040.2

Description : 27.1.19 RNA.processing.ribonucleases Ribonuclease III family protein

Gene families : OG_01_0007885 (Gene family) Phylogenetic Tree(s): OG0007885_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): Solyc10g080040.2.1
Cluster	HCCA cluster: Cluster_245

Target	Alias	Description	ECC score	Gene Family Method
AT4G37510	No alias	Ribonuclease III family protein	0.11	Gene family
GSVIVT01000148001	No alias	27.1.19 RNA.processing.ribonucleases Ribonuclease III...	0.12	Gene family
LOC_Os01g59510	Os01g0810100	27.1.19 RNA.processing.ribonucleases Ribonuclease III...	0.08	Gene family
MA_10436489g0010	No alias	27.1.19 RNA.processing.ribonucleases Ribonuclease III...	0.05	Gene family
Zm00001d043146	GRMZM2G035820	27.1.19 RNA.processing.ribonucleases Ribonuclease III...	0.05	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	InterProScan
MF	GO:0004540	ribonuclease activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000999	RNase_III_dom	98	158

External Links

No external refs found!

Solyc10g080040.2.1 (Solyc10g080040.2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation