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  5. Solyc10g077120.2.1

Solyc10g077120.2.1 (Solyc10g077120.2)


Aliases : Solyc10g077120.2

Description : 1.1.1.2 PS.lightreaction.photosystem II.PSII polypeptide subunits PsbY precursor (psbY) mRNA. This single nuclear gene is imported into the chloroplasts where it is processed into two integral membrane proteins with identical topology (PsbY-1 and PsbY-2). The protein appears to bind manganese but its role is not well understood.


Gene families : OG_01_0007536 (Gene family) Phylogenetic Tree(s): OG0007536_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc10g077120.2.1
Cluster HCCA cluster: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
AT1G67740 YCF32, PSBY photosystem II BY 0.2 Gene family
Cre10.g452100 No alias No description available 0.09 Gene family
LOC_Os08g02630 Os08g0119800 1.1.1.2 PS.lightreaction.photosystem II.PSII polypeptide... 0.17 Gene family
MA_12201g0010 No alias No description available 0.07 Gene family
Smo441673 PACid_15409475 No description available 0.05 Gene family
Zm00001d035135 GRMZM2G134130 1.1.1.2 PS.lightreaction.photosystem II.PSII polypeptide... 0.14 Gene family
Zm00001d049650 GRMZM2G308944 1.1.1.2 PS.lightreaction.photosystem II.PSII polypeptide... 0.14 Gene family

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA InterProScan
BP GO:0015979 photosynthesis IEA InterProScan
CC GO:0016021 integral component of membrane IEA InterProScan
MF GO:0030145 manganese ion binding IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR009388 PSII_PsbY 87 119
IPR009388 PSII_PsbY 159 191
No external refs found!