Solyc10g076910.2.1 (Solyc10g076910.2)


Aliases : Solyc10g076910.2

Description : 27.1.2 RNA.processing.RNA helicase embryo defective 3011 (EMB3011)


Gene families : OG_01_0000259 (Gene family) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc10g076910.2.1
Cluster HCCA cluster: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AT1G26370 No alias RNA helicase family protein 0.03 Gene family
AT1G27900 No alias RNA helicase family protein 0.03 Gene family
AT3G26560 No alias ATP-dependent RNA helicase, putative 0.04 Gene family
AT5G13010 EMB3011 RNA helicase family protein 0.04 Gene family
Cpa|evm.model.tig00000796.23 No alias 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.02 Gene family
Cpa|evm.model.tig00000842.2 No alias 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.02 Gene family
Cpa|evm.model.tig00000984.27 No alias 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.04 Gene family
Cpa|evm.model.tig00020531.53 No alias 27.1.2 RNA.processing.RNA helicase embryo defective 3011... 0.01 Gene family
Cpa|evm.model.tig00022075.25 No alias 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.03 Gene family
Cre07.g349100 No alias 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.03 Gene family
Cre08.g358563 No alias 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.02 Gene family
Cre11.g467654 No alias 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.02 Gene family
GSVIVT01007911001 No alias 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.03 Gene family
GSVIVT01021163001 No alias 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.02 Gene family
GSVIVT01029863001 No alias 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.07 Gene family
LOC_Os02g19860 Os02g0301500 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.04 Gene family
LOC_Os06g23530 Os06g0343100 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.02 Gene family
LOC_Os07g32430 Os07g0508000 27.1.2 RNA.processing.RNA helicase embryo defective 3011... 0.09 Gene family
LOC_Os08g24760 Os08g0335000 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.02 Gene family
LOC_Os11g20554 Os11g0310800 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.02 Gene family
MA_277016g0010 No alias 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.04 Gene family
Smo76120 PACid_15413436 No description available 0.02 Gene family
Smo82212 PACid_15409607 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.02 Gene family
Zm00001d015893 GRMZM2G029258 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.08 Gene family
Zm00001d028923 GRMZM2G385931 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.05 Gene family
Zm00001d045147 GRMZM2G000371,... 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.02 Gene family
Zm00001d049980 GRMZM2G121776 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.11 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan
MF GO:0005524 ATP binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 985 1071
IPR011709 DUF1605 1129 1206
IPR001650 Helicase_C 792 921
IPR011545 DEAD/DEAH_box_helicase_dom 597 746
No external refs found!