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  5. Adi_g008180

Adi_g008180 (APUM12, PUM12)


Aliases : APUM12, PUM12

Description : not classified & original description: none


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g008180

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00167430 PUM7, APUM7,... Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g008224 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04830 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07070 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os12g31000.1 PUM7, APUM7,... Putative pumilio homolog 7, chloroplastic OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp1g09040.1 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005795 Golgi stack IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
MF GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 730 762
IPR001313 Pumilio_RNA-bd_rpt 586 615
IPR001313 Pumilio_RNA-bd_rpt 695 711
IPR001313 Pumilio_RNA-bd_rpt 656 689
IPR001313 Pumilio_RNA-bd_rpt 767 790
IPR001313 Pumilio_RNA-bd_rpt 545 578
IPR001313 Pumilio_RNA-bd_rpt 514 543
IPR001313 Pumilio_RNA-bd_rpt 624 651
No external refs found!