AMTR_s00153p00079500 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00153.43

Description : Pentatricopeptide repeat-containing protein At3g56030, mitochondrial OS=Arabidopsis thaliana


Gene families : OG_01_0001265 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001265_tree ,
OG_02_0000728 (LandPlants) Phylogenetic Tree(s): OG_02_0000728_tree ,
OG_03_0001775 (SeedPlants) Phylogenetic Tree(s): OG_03_0001775_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00153p00079500
Cluster HCCA: Cluster_270

Target Alias Description ECC score Gene Family Method Actions
Gb_33357 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.03 Archaeplastida
LOC_Os07g48850.2 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.03 Archaeplastida
MA_18233g0020 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.03 Archaeplastida
MA_6509g0020 No alias Pentatricopeptide repeat-containing protein At1g18900... 0.02 Archaeplastida
MA_69152g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.02 Archaeplastida
Mp1g17150.1 No alias Pentatricopeptide repeat-containing protein At1g51965,... 0.02 Archaeplastida
Mp4g20290.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.04 Archaeplastida
Smo88008 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica 0.02 Archaeplastida
Solyc03g095960.1.1 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.03 Archaeplastida
Zm00001e035905_P001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.06 Archaeplastida
AT2G40240 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
LOC_Os07g48850.2 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.02 LandPlants
MA_18233g0020 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.03 LandPlants
MA_6509g0020 No alias Pentatricopeptide repeat-containing protein At1g18900... 0.02 LandPlants
Solyc03g095960.1.1 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.04 LandPlants
Zm00001e035905_P001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.02 LandPlants
AT2G40240 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
MA_18233g0020 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.03 SeedPlants
MA_6509g0020 No alias Pentatricopeptide repeat-containing protein At1g18900... 0.02 SeedPlants
Solyc03g095960.1.1 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 240 288
IPR002885 Pentatricopeptide_repeat 174 197
IPR002885 Pentatricopeptide_repeat 313 333
IPR002885 Pentatricopeptide_repeat 208 237
No external refs found!