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  5. Solyc10g050540.2.1

Solyc10g050540.2.1 (Solyc10g050540.2)


Aliases : Solyc10g050540.2

Description : 27.1.3.8 RNA.processing.3 end processing.CstF77 Encodes a homolog of the mammalian protein CstF77, a polyadenylation factor subunit. RNA 3&#8242-endñprocessing factor of antisense FLC transcript. Mediates silencing of the floral repressor gene FLC. CSTF77


Gene families : OG_01_0006594 (Gene family) Phylogenetic Tree(s): OG0006594_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc10g050540.2.1
Cluster HCCA cluster: Cluster_285

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020710.68 No alias 27.1.3.8 RNA.processing.3 end processing.CstF77 Encodes... 0.02 Gene family
Cre12.g506050 No alias 27.1.3.8 RNA.processing.3 end processing.CstF77 Encodes... 0.02 Gene family
GSVIVT01032296001 No alias 27.1.3.8 RNA.processing.3 end processing.CstF77 Encodes... 0.02 Gene family
LOC_Os12g38380 Os12g0571900 27.1.3.8 RNA.processing.3 end processing.CstF77 Encodes... 0.04 Gene family
Zm00001d038093 No alias 27.1.3.8 RNA.processing.3 end processing.CstF77 Encodes... 0.03 Gene family

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan
BP GO:0006397 mRNA processing IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR008847 Suf 336 638
No external refs found!