- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : CRR22
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00029p00062590 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein DOT4,... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00057p00199190 | No alias | Pentatricopeptide repeat-containing protein At4g15720... | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g005518 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g04452 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g06363 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g07129 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g14128 | CRR2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g30627 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g26985 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g32957 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g18085 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g62402 | OSB3 | cofactor of plastid-encoded RNA polymerase *(TAC9) &... | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0005.g009022 | No alias | not classified & original description: CDS=1-2334 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0007.g011229 | No alias | not classified & original description: CDS=1-2535 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0008.g011300 | No alias | not classified & original description: CDS=1-2337 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0020.g015372 | OTP86 | not classified & original description: CDS=1-2592 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0022.g016134 | OTP84 | not classified & original description: CDS=1-2358 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0022.g016137 | No alias | not classified & original description: CDS=1-1566 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0027.g023748 | CRR22 | not classified & original description: CDS=1-2115 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0042.g026834 | No alias | not classified & original description: CDS=1-1929 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0054.g033567 | EMB2758 | not classified & original description: CDS=1-2352 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0058.g034473 | No alias | not classified & original description: CDS=1-2799 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0081.g038640 | OTP86 | not classified & original description: CDS=63-2522 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0134.g049386 | No alias | not classified & original description: CDS=1-2409 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0221.g058730 | No alias | not classified & original description: CDS=1-747 | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g06585 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g34536 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.02G054700.1 | Ceric.02G054700 | not classified & original description: pacid=50584211... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.11G041000.1 | Ceric.11G041000 | not classified & original description: pacid=50594870... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.30G071500.1 | Ceric.30G071500 | not classified & original description: pacid=50609206... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g07481 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g09065 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g09323 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g30495 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g33196 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g39374 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g08906 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g09000 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g03935 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g04879 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g15910 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g18944 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g21670 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g22595 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g28150 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g28210 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g28517 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g28812 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g28844 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g36375 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g42048 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g48923 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g49993 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01010898001 | No alias | Pentatricopeptide repeat-containing protein At2g34400... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g01393 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g18300 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g18932 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g34158 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g44150 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g08499 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_668740g0020 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g15576 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g17470 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g28092 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g28724 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g46073 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g13171 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g16471 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g20268 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g20508 | EMB2758 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g20608 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g34869 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g42692 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g44630 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g13992 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g22406 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g22460 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g07049 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g11830 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g12599 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g12623 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g13291 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g18013 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g57069 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g57727 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g63608 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g15709 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g23075 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g14835 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g17845 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g53972 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0024.g009138 | No alias | component *(NRPC16/RPC34) of TFIIIe transcription factor... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0026.g009533 | CRR22 | not classified & original description: CDS=248-2017 | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0059.g015038 | CRR22 | not classified & original description: CDS=1-1620 | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0174.g024503 | No alias | not classified & original description: CDS=1-2574 | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g27568 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g39472 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g46568 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo34638 | REME1 | Pentatricopeptide repeat-containing protein At2g03880,... | 0.02 | OrthoFinder output from all 47 species | |
| Smo82072 | OTP84 | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g15468 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g05656 | DOT4 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g05657 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g22996 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g26745 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g29865 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g46233 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e007597_P001 | Zm00001e007597 | Pentatricopeptide repeat-containing protein At3g09040,... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e015695_P001 | Zm00001e015695 | Pentatricopeptide repeat-containing protein At4g16835,... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004045 | aminoacyl-tRNA hydrolase activity | IEP | HCCA |
| MF | GO:0004425 | indole-3-glycerol-phosphate synthase activity | IEP | HCCA |
| MF | GO:0005509 | calcium ion binding | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | HCCA |
| MF | GO:0016831 | carboxy-lyase activity | IEP | HCCA |
| MF | GO:0016887 | ATP hydrolysis activity | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 480 | 512 |
| IPR002885 | Pentatricopeptide_repeat | 282 | 307 |
| IPR002885 | Pentatricopeptide_repeat | 254 | 276 |
| IPR002885 | Pentatricopeptide_repeat | 310 | 357 |
| IPR002885 | Pentatricopeptide_repeat | 178 | 224 |
| IPR002885 | Pentatricopeptide_repeat | 77 | 122 |
| IPR002885 | Pentatricopeptide_repeat | 413 | 460 |
| No external refs found! |