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  5. Ehy_g07946

Ehy_g07946 (SNL4)


Aliases : SNL4

Description : component *(SNL) of histone deacetylase machineries & original description: none


Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g07946
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
Adi_g013447 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Adi_g103364 SNL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117146 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Ala_g17667 SNL4 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Ala_g21578 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Als_g42067 SNL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27014 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Azfi_s0015.g014103 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Cba_g77516 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001155.28 SNL3, ATSIN3, SIN3 Paired amphipathic helix protein Sin3-like 1... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021234.23 SNL5 Paired amphipathic helix protein Sin3-like 3... 0.01 OrthoFinder output from all 47 species
LOC_Os01g01960.1 SNL3, ATSIN3,... component SNL of histone deacetylase machineries 0.04 OrthoFinder output from all 47 species
MA_8638132g0010 SNL4 Paired amphipathic helix protein Sin3-like 3... 0.02 OrthoFinder output from all 47 species
Ore_g28709 SNL4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30140 SNL4 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Ore_g30141 SNL2 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Ore_g44719 SNL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0277.g027077 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Sam_g14557 No alias component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Solyc02g067570.3.1 SNL2, Solyc02g067570 component SNL of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
Zm00001e017111_P002 SNL4, Zm00001e017111 component SNL of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
Zm00001e025644_P001 SNL4, Zm00001e025644 component SNL of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004055 argininosuccinate synthase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006525 arginine metabolic process IEP HCCA
BP GO:0006526 arginine biosynthetic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR031693 Sin3_C 1016 1259
IPR003822 PAH 121 165
IPR003822 PAH 315 359
IPR003822 PAH 32 75
IPR013194 HDAC_interact_dom 450 541
No external refs found!