Aliases : Solyc10g044450.2
Description : 35.1 not assigned.no ontology Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD) UPF3
Gene families : OG_01_0001962 (Gene family) Phylogenetic Tree(s): OG0001962_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR network (cutoff 100): Solyc10g044450.2.1 | |
Cluster | HCCA cluster: Cluster_37 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G33980 | ATUPF3, UPF3 | Smg-4/UPF3 family protein | 0.03 | Gene family | |
Cre12.g488100 | No alias | 35.1 not assigned.no ontology Involved in mRNA... | 0.02 | Gene family | |
GSVIVT01023232001 | No alias | 35.1 not assigned.no ontology Involved in mRNA... | 0.07 | Gene family | |
MA_102917g0010 | No alias | 35.1 not assigned.no ontology Involved in mRNA... | 0.03 | Gene family | |
Zm00001d003611 | GRMZM2G380361 | 35.1 not assigned.no ontology Involved in mRNA... | 0.09 | Gene family | |
Zm00001d025461 | GRMZM2G139419 | 35.1 not assigned.no ontology Involved in mRNA... | 0.05 | Gene family |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR005120 | UPF3_dom | 4 | 166 |
No external refs found! |