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  5. Solyc10g044450.2.1

Solyc10g044450.2.1 (Solyc10g044450.2)


Aliases : Solyc10g044450.2

Description : 35.1 not assigned.no ontology Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD) UPF3


Gene families : OG_01_0001962 (Gene family) Phylogenetic Tree(s): OG0001962_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc10g044450.2.1
Cluster HCCA cluster: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AT1G33980 ATUPF3, UPF3 Smg-4/UPF3 family protein 0.03 Gene family
Cre12.g488100 No alias 35.1 not assigned.no ontology Involved in mRNA... 0.02 Gene family
GSVIVT01023232001 No alias 35.1 not assigned.no ontology Involved in mRNA... 0.07 Gene family
MA_102917g0010 No alias 35.1 not assigned.no ontology Involved in mRNA... 0.03 Gene family
Zm00001d003611 GRMZM2G380361 35.1 not assigned.no ontology Involved in mRNA... 0.09 Gene family
Zm00001d025461 GRMZM2G139419 35.1 not assigned.no ontology Involved in mRNA... 0.05 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005120 UPF3_dom 4 166
No external refs found!