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  5. Sacu_v1.1_s3707.g028947

Sacu_v1.1_s3707.g028947


Description : mitochondrial RNA splicing factor *(ABO5) & original description: CDS=1-1299


Gene families : OG0005617 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005617_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s3707.g028947
Cluster HCCA: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
Dac_g45786 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.03 OrthoFinder output from all 47 species
Dde_g24980 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os02g13340.1 ABO5, LOC_Os02g13340 ABO5 mitochondrial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Lfl_g34233 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15383 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07928 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g49410 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g26992 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 221 249
IPR002885 Pentatricopeptide_repeat 252 301
IPR002885 Pentatricopeptide_repeat 310 366
IPR002885 Pentatricopeptide_repeat 72 129
No external refs found!