Solyc10g031560.1.1 (Solyc10g031560.1)


Aliases : Solyc10g031560.1

Description : 27.2 RNA.transcription RNA polymerase beta' subunit-1 RPOC1


Gene families : OG_01_0003439 (Gene family) Phylogenetic Tree(s): OG0003439_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc10g031560.1.1
Cluster HCCA cluster: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
ATCG00180 RPOC1 DNA-directed RNA polymerase family protein 0.13 Gene family
Solyc01g017370.1.1 Solyc01g017370.1 27.2 RNA.transcription RNA polymerase beta' subunit-1 RPOC1 0.04 Gene family
Solyc01g017470.2.1 Solyc01g017470.2 27.2 RNA.transcription RNA polymerase beta' subunit-1 RPOC1 0.05 Gene family
Solyc07g021220.2.1 Solyc07g021220.2 27.2 RNA.transcription RNA polymerase beta' subunit-1 RPOC1 0.03 Gene family
Solyc08g028950.2.1 Solyc08g028950.2 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.04 Gene family
Solyc12g062570.2.1 Solyc12g062570.2 27.2 RNA.transcription RNA polymerase beta' subunit-1 RPOC1 0.04 Gene family
Solyc12g062580.1.1 Solyc12g062580.1 27.2 RNA.transcription RNA polymerase beta' subunit-1 RPOC1 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan
BP GO:0006351 transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007066 RNA_pol_Rpb1_3 24 101
No external refs found!