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  5. Sacu_v1.1_s1246.g027974

Sacu_v1.1_s1246.g027974


Description : component *(YIP5) of trans-Golgi-network (TGN) trafficking complex & original description: CDS=171-1010


Gene families : OG0002556 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002556_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s1246.g027974
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01016466001 No alias No description available 0.02 OrthoFinder output from all 47 species
Len_g28734 No alias component *(YIP5) of trans-Golgi-network (TGN)... 0.04 OrthoFinder output from all 47 species
Pir_g01575 No alias component *(YIP5) of trans-Golgi-network (TGN)... 0.03 OrthoFinder output from all 47 species
Sam_g35163 No alias component *(YIP5) of trans-Golgi-network (TGN)... 0.02 OrthoFinder output from all 47 species
Solyc01g098900.3.1 Solyc01g098900 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004779 sulfate adenylyltransferase activity IEP HCCA
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0016073 snRNA metabolic process IEP HCCA
BP GO:0016180 snRNA processing IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0034472 snRNA 3'-end processing IEP HCCA
BP GO:0034477 U6 snRNA 3'-end processing IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR006977 Yip1_dom 106 267
IPR011063 TilS/TtcA_N 73 234
No external refs found!