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  5. Sacu_v1.1_s1065.g027930

Sacu_v1.1_s1065.g027930 (ATCAF1, CAF1)


Aliases : ATCAF1, CAF1

Description : not classified & original description: CDS=49-1527


Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s1065.g027930
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AT4G31010 No alias RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.03 OrthoFinder output from all 47 species
Aob_g07417 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.02 OrthoFinder output from all 47 species
Aspi01Gene60099.t1 ATCAF1, CAF1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65743.t1 CAF2, ATCAF2,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06914 CAF2, ATCAF2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g19169 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01013781001 CAF2, ATCAF2 CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
MA_14069g0010 No alias CRS2-associated factor 1, mitochondrial OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Nbi_g08909 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.02 OrthoFinder output from all 47 species
Pir_g48930 ATCAF1, CAF1 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0088.g018530 ATCAF1, CAF1 not classified & original description: CDS=49-1527 0.03 OrthoFinder output from all 47 species
Smo62891 CAF2, ATCAF2 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
Zm00001e021643_P003 Zm00001e021643 mCSF mitochondrial RNA splicing factor 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 177 260
IPR001890 RNA-binding_CRM 298 378
No external refs found!