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  5. Sacu_v1.1_s0533.g027469

Sacu_v1.1_s0533.g027469


Description : not classified & original description: CDS=1-663


Gene families : OG0006500 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006500_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0533.g027469
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
ATCG00180 RPOC1 DNA-directed RNA polymerase family protein 0.15 OrthoFinder output from all 47 species
Aev_g25869 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.14 OrthoFinder output from all 47 species
Als_g17479 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.03 OrthoFinder output from all 47 species
Aspi01Gene32263.t1 RPOC1, Aspi01Gene32263 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g01180 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.04 OrthoFinder output from all 47 species
Ceric.07G092700.1 RPOC1, Ceric.07G092700 not classified & original description: pacid=50627572... 0.03 OrthoFinder output from all 47 species
Ceric.23G081100.1 RPOC1, Ceric.23G081100 not classified & original description: pacid=50610064... 0.03 OrthoFinder output from all 47 species
Ceric.29G004700.1 RPOC1, Ceric.29G004700 not classified & original description: pacid=50625659... 0.1 OrthoFinder output from all 47 species
Ceric.29G004800.1 RPOC1, Ceric.29G004800 core component *(RpoC1) of plastid-encoded RNA... 0.08 OrthoFinder output from all 47 species
Ceric.38G010000.1 RPOC1, Ceric.38G010000 core component *(RpoC1) of plastid-encoded RNA... 0.05 OrthoFinder output from all 47 species
Gb_39909 RPOC1 RpoC1 core component plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
LOC_Os02g24614.1 RPOC1, LOC_Os02g24614 RpoC1 core component plastid-encoded RNA polymerase 0.07 OrthoFinder output from all 47 species
Mp4g02290.1 RPOC1 DNA-directed RNA polymerase subunit beta OS=Marchantia... 0.04 OrthoFinder output from all 47 species
Nbi_g14005 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.03 OrthoFinder output from all 47 species
Pir_g09480 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.09 OrthoFinder output from all 47 species
Sam_g03396 No alias core component *(RpoC1) of plastid-encoded RNA... 0.02 OrthoFinder output from all 47 species
Solyc01g017370.2.1 RPOC1, Solyc01g017370 DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.06 OrthoFinder output from all 47 species
Solyc01g017470.3.1 RPOC1, Solyc01g017470 DNA-directed RNA polymerase subunit beta OS=Solanum... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!