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  5. Sacu_v1.1_s0277.g027075

Sacu_v1.1_s0277.g027075 (RPL23AB)


Aliases : RPL23AB

Description : component *(uL23) of large ribosomal-subunit (LSU) proteome & original description: CDS=199-660


Gene families : OG0001401 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001401_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0277.g027075

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00069970 RPL23AB,... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
AT2G39460 RPL23A, RPL23AA, ATRPL23A ribosomal protein L23AA 0.05 OrthoFinder output from all 47 species
AT3G55280 RPL23AB ribosomal protein L23AB 0.03 OrthoFinder output from all 47 species
Adi_g005345 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g18428 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000037.39 RPL23AB Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Cre06.g282500 RPL23A, RPL23AA, ATRPL23A Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
GSVIVT01025606001 No alias 60S ribosomal protein L23a-1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os04g42270.2 RPL23AB, LOC_Os04g42270 component RPL23a of LSU proteome component 0.04 OrthoFinder output from all 47 species
MA_10430928g0010 RPL23AB component RPL23a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Mp2g00570.1 RPL23AB component RPL23a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Msp_g10039 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ore_g10110 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c12_19360V3.1 RPL23AB, Pp3c12_19360 ribosomal protein L23AB 0.02 OrthoFinder output from all 47 species
Pp3c13_15920V3.1 RPL23AB, Pp3c13_15920 ribosomal protein L23AB 0.02 OrthoFinder output from all 47 species
Pp3c3_21160V3.1 RPL23AB, Pp3c3_21160 ribosomal protein L23AB 0.01 OrthoFinder output from all 47 species
Pp3c4_8620V3.1 RPL23AB, Pp3c4_8620 ribosomal protein L23AB 0.03 OrthoFinder output from all 47 species
Ppi_g15986 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g06116 No alias component *(uL23) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g06117 No alias component *(uL23) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Smo271663 RPL23AB Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Solyc09g005720.3.1 RPL23AB, Solyc09g005720 component RPL23a of LSU proteome component 0.04 OrthoFinder output from all 47 species
Spa_g10914 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g25289 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Tin_g03678 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e041164_P001 RPL23A, RPL23AA,... component RPL23a of LSU proteome component 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013025 Ribosomal_L25/23 73 135
IPR005633 Ribosomal_L23/L25_N 13 63
No external refs found!