1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0257.g026834

Sacu_v1.1_s0257.g026834 (ATPRP40C, PRP40C)


Aliases : ATPRP40C, PRP40C

Description : pre-mRNA-processing protein *(PRP40C) & original description: CDS=62-3205


Gene families : OG0006310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006310_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0257.g026834

Target Alias Description ECC score Gene Family Method Actions
Dcu_g14070 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os10g34380.1 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.04 OrthoFinder output from all 47 species
Lfl_g02397 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Mp5g09830.1 ATPRP40C, PRP40C pre-mRNA-processing protein (PRP40C) 0.02 OrthoFinder output from all 47 species
Sam_g10525 No alias pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
Sam_g25068 No alias pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
Solyc04g008700.3.1 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.03 OrthoFinder output from all 47 species
Zm00001e012643_P002 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002713 FF_domain 910 961
IPR002713 FF_domain 739 787
IPR002713 FF_domain 675 720
IPR002713 FF_domain 809 855
IPR001202 WW_dom 466 492
No external refs found!