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  5. Sacu_v1.1_s0238.g026586

Sacu_v1.1_s0238.g026586 (GTB1)


Aliases : GTB1

Description : component *(SPT6) of SPT6-IWS1 transcription elongation complex & original description: CDS=102-5363


Gene families : OG0001807 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001807_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0238.g026586

Target Alias Description ECC score Gene Family Method Actions
Ala_g25347 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Mp2g25720.1 GTB1 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.03 OrthoFinder output from all 47 species
Ore_g08934 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species
Pnu_g07524 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species
Solyc10g081020.2.1 GTB1, Solyc10g081020 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
MF GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR041692 HHH_9 1050 1087
IPR035420 Spt6_SH2 1274 1485
IPR028231 Spt6_YqgF 770 924
IPR032706 Spt6_HHH 934 1036
IPR028083 Spt6_acidic_N_dom 32 121
No external refs found!