Sacu_v1.1_s0237.g026578 (ATCAF1, CAF1)

Aliases : ATCAF1, CAF1

Description : not classified & original description: CDS=1-570

Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0237.g026578
Cluster	HCCA: Cluster_44

Target	Alias	Description	ECC score	Gene Family Method
Ala_g19873	CAF2, ATCAF2	component *(CAF) of CRS2-CAF plastidial RNA splicing...	0.03	OrthoFinder output from all 47 species
Ehy_g19169	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0088.g018530	ATCAF1, CAF1	not classified & original description: CDS=49-1527	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001890	RNA-binding_CRM	24	104

External Links

No external refs found!