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  5. Sacu_v1.1_s0225.g026322

Sacu_v1.1_s0225.g026322 (RAT5, HTA1, ATHTA1)


Aliases : RAT5, HTA1, ATHTA1

Description : histone *(H2A) & original description: CDS=44-520


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0225.g026322

Target Alias Description ECC score Gene Family Method Actions
Aop_g54113 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0102.g044568 HTA6 histone *(H2A) & original description: CDS=1-438 0.03 OrthoFinder output from all 47 species
Azfi_s0678.g081837 HTA10 histone *(H2A) & original description: CDS=127-525 0.03 OrthoFinder output from all 47 species
Ceric.31G042200.1 HTA2, Ceric.31G042200 histone *(H2A) & original description: pacid=50574126... 0.04 OrthoFinder output from all 47 species
Dcu_g41140 HTA2 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g15493 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09410 HTA6 histone *(H2A) & original description: none 0.08 OrthoFinder output from all 47 species
GSVIVT01002746001 RAT5, HTA1, ATHTA1 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from all 47 species
Gb_25326 GAMMA-H2AX,... histone (H2A) 0.04 OrthoFinder output from all 47 species
Len_g26088 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
MA_130065g0010 HTA6 histone (H2A) 0.04 OrthoFinder output from all 47 species
MA_213048g0010 HTA7 histone (H2A) 0.04 OrthoFinder output from all 47 species
Pnu_g05880 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12865 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 118 148
IPR007125 Histone_H2A/H2B/H3 32 115
No external refs found!