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  5. Sacu_v1.1_s0219.g026134

Sacu_v1.1_s0219.g026134 (ATSR, SR)


Aliases : ATSR, SR

Description : not classified & original description: CDS=101-1054


Gene families : OG0004131 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004131_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0219.g026134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00255960 ATSR, SR,... Amino acid metabolism.biosynthesis.serine family.serine... 0.02 OrthoFinder output from all 47 species
Ceric.37G027400.1 ATSR, SR, Ceric.37G027400 EC_5.1 racemase or epimerase & original description:... 0.03 OrthoFinder output from all 47 species
Cre06.g278101 ATSR, SR Amino acid metabolism.biosynthesis.serine family.serine... 0.01 OrthoFinder output from all 47 species
GSVIVT01019772001 ATSR, SR Amino acid metabolism.biosynthesis.serine family.serine... 0.01 OrthoFinder output from all 47 species
Mp4g13090.1 ATSR, SR serine racemase 0.02 OrthoFinder output from all 47 species
Nbi_g18675 ATSR, SR EC_5.1 racemase or epimerase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02826 ATSR, SR EC_5.1 racemase or epimerase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g00520 ATSR, SR EC_5.1 racemase or epimerase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0003972 RNA ligase (ATP) activity IEP HCCA
MF GO:0004014 adenosylmethionine decarboxylase activity IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006597 spermine biosynthetic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0008215 spermine metabolic process IEP HCCA
BP GO:0008216 spermidine metabolic process IEP HCCA
BP GO:0008295 spermidine biosynthetic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008452 RNA ligase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
InterPro domains Description Start Stop
IPR001926 TrpB-like_PALP 134 296
No external refs found!