1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0218.g026116

Sacu_v1.1_s0218.g026116


Description : not classified & original description: CDS=1-2901


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0218.g026116
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00113430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g18485... 0.04 OrthoFinder output from all 47 species
AMTR_s00016p00252350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22690... 0.01 OrthoFinder output from all 47 species
AMTR_s00103p00160020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
AT2G40720 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G15130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g021587 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036755 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g078577 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g083315 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085794 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087421 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101336 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17191 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g06074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12767 CRR2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g12583 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17095 OTP84 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g26992 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g26997 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27232 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03193 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0007.g010531 CRR2 not classified & original description: CDS=1-1098 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012382 OTP84 not classified & original description: CDS=1-2100 0.04 OrthoFinder output from all 47 species
Azfi_s0014.g013651 No alias not classified & original description: CDS=1-3549 0.03 OrthoFinder output from all 47 species
Azfi_s0015.g013783 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-1998 0.03 OrthoFinder output from all 47 species
Azfi_s0019.g015073 No alias not classified & original description: CDS=1-2832 0.05 OrthoFinder output from all 47 species
Azfi_s0021.g015711 No alias not classified & original description: CDS=1-3111 0.03 OrthoFinder output from all 47 species
Azfi_s0033.g025102 No alias not classified & original description: CDS=1-3510 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031470 No alias not classified & original description: CDS=1-1512 0.03 OrthoFinder output from all 47 species
Azfi_s0081.g038640 OTP86 not classified & original description: CDS=63-2522 0.01 OrthoFinder output from all 47 species
Azfi_s1704.g105987 No alias not classified & original description: CDS=1-2742 0.03 OrthoFinder output from all 47 species
Cba_g06200 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07466 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19795 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g22369 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g27691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67815 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G000400.1 Ceric.07G000400 not classified & original description: pacid=50627195... 0.03 OrthoFinder output from all 47 species
Ceric.07G024400.1 Ceric.07G024400 not classified & original description: pacid=50626298... 0.03 OrthoFinder output from all 47 species
Ceric.15G015100.1 CRR22, Ceric.15G015100 not classified & original description: pacid=50640379... 0.03 OrthoFinder output from all 47 species
Ceric.21G062800.1 Ceric.21G062800 not classified & original description: pacid=50603272... 0.04 OrthoFinder output from all 47 species
Ceric.25G047500.1 Ceric.25G047500 not classified & original description: pacid=50594463... 0.01 OrthoFinder output from all 47 species
Ceric.27G069000.1 Ceric.27G069000 not classified & original description: pacid=50605685... 0.02 OrthoFinder output from all 47 species
Dcu_g11021 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g12105 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g16522 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38650 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g05342 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08525 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g30825 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g22835 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26697 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01021576001 BRCA1, ATBRCA1 DNA damage response.BRCA1–BARD1 DNA-damage response... 0.03 OrthoFinder output from all 47 species
LOC_Os08g37520.1 LOC_Os08g37520 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
LOC_Os11g45410.1 LOC_Os11g45410 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Len_g03311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05167 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g17794 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g17928 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18584 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26486 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g47762 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g18570 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g39239 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_3462g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 47 species
Msp_g13483 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g16883 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26370 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g34215 OTP84 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g43705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g44509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29837 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08791 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53019 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g03383 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g04976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11676 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g16013 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g23134 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29223 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g30157 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g34092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36251 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52092 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo136134 EMB2261 Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
Tin_g04721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17148 VAC1, ECB2, ATECB2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g24074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27180 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
CC GO:0000782 telomere cap complex IEP HCCA
CC GO:0000783 nuclear telomere cap complex IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0010011 auxin binding IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
MF GO:0042562 hormone binding IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
CC GO:1990879 CST complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 651 673
IPR002885 Pentatricopeptide_repeat 679 707
IPR002885 Pentatricopeptide_repeat 248 270
IPR002885 Pentatricopeptide_repeat 812 841
IPR002885 Pentatricopeptide_repeat 885 907
IPR002885 Pentatricopeptide_repeat 784 805
IPR002885 Pentatricopeptide_repeat 580 609
IPR002885 Pentatricopeptide_repeat 448 474
IPR002885 Pentatricopeptide_repeat 551 572
IPR002885 Pentatricopeptide_repeat 476 512
IPR002885 Pentatricopeptide_repeat 374 421
IPR002885 Pentatricopeptide_repeat 708 754
IPR002885 Pentatricopeptide_repeat 172 220
IPR002885 Pentatricopeptide_repeat 274 321
IPR002885 Pentatricopeptide_repeat 71 120
No external refs found!