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  5. Sacu_v1.1_s0211.g025933

Sacu_v1.1_s0211.g025933


Description : not classified & original description: CDS=134-2632


Gene families : OG0002233 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002233_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0211.g025933
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00265580 evm_27.TU.AmTr_v1... DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020629.149 No alias No description available 0.01 OrthoFinder output from all 47 species
Dde_g00918 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
InterPro domains Description Start Stop
IPR000432 DNA_mismatch_repair_MutS_C 482 666
No external refs found!