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  5. Sacu_v1.1_s0208.g025833

Sacu_v1.1_s0208.g025833


Description : component *(SPT6) of SPT6-IWS1 transcription elongation complex & original description: CDS=1-5946


Gene families : OG0001807 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001807_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0208.g025833
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene66158.t1 Aspi01Gene66158 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Azfi_s0351.g066576 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species
Nbi_g34788 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Smo164675 GTB1 Chromatin organisation.histone chaperone... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004683 calmodulin-dependent protein kinase activity IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
InterPro domains Description Start Stop
IPR032706 Spt6_HHH 747 849
IPR035420 Spt6_SH2 1070 1265
IPR028088 Spt6_HTH_DNA-bd_dom 161 282
IPR028231 Spt6_YqgF 607 743
No external refs found!