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  5. Sacu_v1.1_s0207.g025789

Sacu_v1.1_s0207.g025789


Description : Trihelix-type transcription factor & original description: CDS=31-636


Gene families : OG0008300 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008300_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0207.g025789
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00267790 NDH18,... Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.02 OrthoFinder output from all 47 species
AT5G43750 NDH18 NAD(P)H dehydrogenase 18 0.04 OrthoFinder output from all 47 species
Aev_g02431 No alias component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.02 OrthoFinder output from all 47 species
Ala_g17202 No alias component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.04 OrthoFinder output from all 47 species
Als_g07854 NDH18 component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.04 OrthoFinder output from all 47 species
Aob_g02633 No alias component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.05 OrthoFinder output from all 47 species
Aop_g04082 No alias component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.05 OrthoFinder output from all 47 species
Azfi_s0050.g030970 No alias component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.06 OrthoFinder output from all 47 species
Cba_g27058 No alias component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.04 OrthoFinder output from all 47 species
Ceric.14G064300.1 Ceric.14G064300 component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.03 OrthoFinder output from all 47 species
Dac_g03604 No alias component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.05 OrthoFinder output from all 47 species
Dcu_g10625 No alias component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.05 OrthoFinder output from all 47 species
Dde_g03709 No alias component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.05 OrthoFinder output from all 47 species
Ehy_g00304 No alias component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01018092001 NDH18 Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.05 OrthoFinder output from all 47 species
LOC_Os01g70400.1 NDH18, LOC_Os01g70400 component PnsB5/NDH18 of NDH subcomplex B 0.03 OrthoFinder output from all 47 species
Len_g09904 No alias component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.03 OrthoFinder output from all 47 species
Lfl_g12179 No alias component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.03 OrthoFinder output from all 47 species
Mp8g08560.1 No alias component PnsB5/NDH18 of NDH subcomplex B 0.02 OrthoFinder output from all 47 species
Msp_g10241 NDH18 component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.03 OrthoFinder output from all 47 species
Nbi_g17474 No alias component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.03 OrthoFinder output from all 47 species
Ore_g00563 No alias component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.04 OrthoFinder output from all 47 species
Pir_g10007 No alias component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.03 OrthoFinder output from all 47 species
Ppi_g01810 No alias component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.05 OrthoFinder output from all 47 species
Smo412627 NDH18 Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.02 OrthoFinder output from all 47 species
Solyc09g083190.3.1 NDH18, Solyc09g083190 component PnsB5/NDH18 of NDH subcomplex B 0.05 OrthoFinder output from all 47 species
Spa_g11055 No alias component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.05 OrthoFinder output from all 47 species
Tin_g37061 No alias component *(PnsB5/NDH18) of NDH subcomplex B & original... 0.02 OrthoFinder output from all 47 species
Zm00001e018750_P001 NDH18, Zm00001e018750 component PnsB5/NDH18 of NDH subcomplex B 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006450 regulation of translational fidelity IEP HCCA
MF GO:0016597 amino acid binding IEP HCCA
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
InterPro domains Description Start Stop
IPR044822 Myb_DNA-bind_4 34 124
No external refs found!