Sacu_v1.1_s0206.g025749

Description : component *(eS1) of small ribosomal-subunit (SSU) proteome & original description: CDS=137-922

Gene families : OG0001731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001731_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0206.g025749

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00271660	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.12	OrthoFinder output from all 47 species
AMTR_s00026p00042160	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
AT3G04840	No alias	Ribosomal protein S3Ae	0.23	OrthoFinder output from all 47 species
AT4G34670	No alias	Ribosomal protein S3Ae	0.18	OrthoFinder output from all 47 species
Adi_g060842	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g060843	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g124961	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ala_g00907	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Ala_g38346	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aop_g05100	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.16	OrthoFinder output from all 47 species
Aop_g20489	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Aop_g59790	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene36093.t1	Aspi01Gene36093	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0087.g042272	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Azfi_s0171.g055692	No alias	not classified & original description: CDS=106-348	0.03	OrthoFinder output from all 47 species
Azfi_s0825.g088224	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Cba_g09637	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g21209	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cba_g69205	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ceric.10G049700.1	Ceric.10G049700	component *(eS1) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Ceric.32G043000.1	Ceric.32G043000	component *(eS1) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020710.39	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.13	OrthoFinder output from all 47 species
Cre13.g568650	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.15	OrthoFinder output from all 47 species
Dac_g13329	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Dac_g26683	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Dcu_g29549	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Dcu_g40359	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dde_g00448	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01018024001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
GSVIVT01021836001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.2	OrthoFinder output from all 47 species
Gb_02289	No alias	component RPS3a of SSU proteome	0.16	OrthoFinder output from all 47 species
LOC_Os02g18550.1	LOC_Os02g18550	component RPS3a of SSU proteome	0.08	OrthoFinder output from all 47 species
LOC_Os03g10340.1	LOC_Os03g10340	component RPS3a of SSU proteome	0.13	OrthoFinder output from all 47 species
LOC_Os12g21798.1	LOC_Os12g21798	component RPS3a of SSU proteome	0.11	OrthoFinder output from all 47 species
Lfl_g26102	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
MA_124901g0010	No alias	component RPS3a of SSU proteome	0.06	OrthoFinder output from all 47 species
MA_31004g0010	No alias	component RPS3a of SSU proteome	0.15	OrthoFinder output from all 47 species
Mp6g02810.1	No alias	component RPS3a of SSU proteome	0.14	OrthoFinder output from all 47 species
Msp_g05152	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.14	OrthoFinder output from all 47 species
Nbi_g15011	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ore_g35645	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g08122	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Pir_g15097	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pir_g60403	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pp3c11_17260V3.1	Pp3c11_17260	Ribosomal protein S3Ae	0.05	OrthoFinder output from all 47 species
Pp3c22_18300V3.1	Pp3c22_18300	Ribosomal protein S3Ae	0.07	OrthoFinder output from all 47 species
Ppi_g08695	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g17698	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g27302	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sam_g06811	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Sam_g07668	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Sam_g07669	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Sam_g14495	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g30070	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Smo160008	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Smo271906	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Smo271907	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Solyc03g097900.3.1	Solyc03g097900	component RPS3a of SSU proteome	0.13	OrthoFinder output from all 47 species
Solyc06g072490.3.1	Solyc06g072490	component RPS3a of SSU proteome	0.17	OrthoFinder output from all 47 species
Solyc09g082520.3.1	Solyc09g082520	component RPS3a of SSU proteome	0.04	OrthoFinder output from all 47 species
Spa_g05776	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.16	OrthoFinder output from all 47 species
Tin_g01747	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.14	OrthoFinder output from all 47 species
Zm00001e038777_P001	Zm00001e038777	component RPS3a of SSU proteome	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
CC	GO:0031390	Ctf18 RFC-like complex	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001593	Ribosomal_S3Ae	16	221

External Links

No external refs found!

Sacu_v1.1_s0206.g025749

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation