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  5. Sacu_v1.1_s0204.g025680

Sacu_v1.1_s0204.g025680


Description : histone *(H2B) & original description: CDS=1-474


Gene families : OG0000176 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000176_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0204.g025680

Target Alias Description ECC score Gene Family Method Actions
Adi_g128631 No alias histone *(H2B) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g56283 No alias histone *(H2B) & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g24674 HTB4 histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene58547.t1 HTB4, Aspi01Gene58547 histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g38216 HTB4 histone *(H2B) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g10443 No alias histone *(H2B) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g23041 No alias histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
MA_138049g0010 HTB11 histone (H2B) 0.03 OrthoFinder output from all 47 species
Pnu_g20788 HTB4 histone *(H2B) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g29793 HTB11 histone *(H2B) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50452 No alias histone *(H2B) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g51725 HTB4 histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004028_P001 HTB11, Zm00001e004028 histone (H2B) 0.02 OrthoFinder output from all 47 species
Zm00001e020484_P002 HTB1, Zm00001e020484 histone (H2B) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004146 dihydrofolate reductase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006760 folic acid-containing compound metabolic process IEP HCCA
BP GO:0009396 folic acid-containing compound biosynthetic process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0046653 tetrahydrofolate metabolic process IEP HCCA
BP GO:0046654 tetrahydrofolate biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 12 120
No external refs found!