Sacu_v1.1_s0197.g025517 (ATSMC2)

Aliases : ATSMC2

Description : component *(CAP-E2/SMC2) of condensin I/II complex & original description: CDS=1-3741

Gene families : OG0005512 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005512_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0197.g025517

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00193070	ATSMC2,...	Cell cycle.mitosis and meiosis.chromatin...	0.07	OrthoFinder output from all 47 species
AT3G47460	ATSMC2	Structural maintenance of chromosomes (SMC) family protein	0.05	OrthoFinder output from all 47 species
AT5G62410	TTN3, ATSMC4,...	structural maintenance of chromosomes 2	0.07	OrthoFinder output from all 47 species
Adi_g078006	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.03	OrthoFinder output from all 47 species
Adi_g117141	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.06	OrthoFinder output from all 47 species
Aev_g40103	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.03	OrthoFinder output from all 47 species
Ala_g23199	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.09	OrthoFinder output from all 47 species
Als_g01195	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.09	OrthoFinder output from all 47 species
Aop_g05581	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.08	OrthoFinder output from all 47 species
Aspi01Gene72499.t1	ATSMC2, Aspi01Gene72499	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.12	OrthoFinder output from all 47 species
Azfi_s0003.g007776	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.04	OrthoFinder output from all 47 species
Ceric.12G044400.1	ATSMC2, Ceric.12G044400	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.16	OrthoFinder output from all 47 species
Ceric.15G020500.1	ATSMC2, Ceric.15G020500	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.17	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000615.55	TTN3, ATSMC4,...	Cell cycle.mitosis and meiosis.chromatin...	0.04	OrthoFinder output from all 47 species
Cre02.g086650	ATSMC2	Cell cycle.mitosis and meiosis.chromatin...	0.06	OrthoFinder output from all 47 species
Dac_g14763	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.08	OrthoFinder output from all 47 species
Dcu_g03186	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.16	OrthoFinder output from all 47 species
GSVIVT01018715001	ATSMC2	Cell cycle.mitosis and meiosis.chromatin...	0.06	OrthoFinder output from all 47 species
Gb_17843	ATSMC2	component CAP-E2/SMC2 of condensin I/II complex	0.1	OrthoFinder output from all 47 species
LOC_Os01g67740.1	ATSMC2, LOC_Os01g67740	component CAP-E2/SMC2 of condensin I/II complex	0.03	OrthoFinder output from all 47 species
Len_g12256	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.04	OrthoFinder output from all 47 species
Lfl_g37430	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.07	OrthoFinder output from all 47 species
MA_15346g0010	ATSMC2	component CAP-E2/SMC2 of condensin I/II complex	0.03	OrthoFinder output from all 47 species
Mp1g04330.1	ATSMC2	component CAP-E2/SMC2 of condensin I/II complex	0.16	OrthoFinder output from all 47 species
Msp_g14469	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.08	OrthoFinder output from all 47 species
Nbi_g02470	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.12	OrthoFinder output from all 47 species
Ppi_g29913	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.06	OrthoFinder output from all 47 species
Sam_g14601	No alias	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.08	OrthoFinder output from all 47 species
Smo137981	ATSMC2	Cell cycle.mitosis and meiosis.chromatin...	0.05	OrthoFinder output from all 47 species
Solyc03g093250.2.1	ATSMC2, Solyc03g093250	component CAP-E2/SMC2 of condensin I/II complex	0.03	OrthoFinder output from all 47 species
Solyc03g093260.3.1	ATSMC2, Solyc03g093260	component CAP-E2/SMC2 of condensin I/II complex	0.07	OrthoFinder output from all 47 species
Spa_g41237	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.06	OrthoFinder output from all 47 species
Tin_g10631	ATSMC2	component *(CAP-E2/SMC2) of condensin I/II complex &...	0.08	OrthoFinder output from all 47 species
Zm00001e018930_P001	ATSMC2, Zm00001e018930	component CAP-E2/SMC2 of condensin I/II complex	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0051276	chromosome organization	IEA	Interproscan
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000796	condensin complex	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	HCCA
BP	GO:0007076	mitotic chromosome condensation	IEP	HCCA
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0030261	chromosome condensation	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003395	RecF/RecN/SMC_N	72	1231
IPR010935	SMC_hinge	589	707

External Links

No external refs found!

Sacu_v1.1_s0197.g025517 (ATSMC2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation