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  5. Sacu_v1.1_s0192.g025347

Sacu_v1.1_s0192.g025347


Description : not classified & original description: CDS=1-1002


Gene families : OG0008375 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008375_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0192.g025347
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Adi_g023752 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g11051 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14380 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g03327 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g27755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_104296g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g08397 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09263 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g15954 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g30613 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g28855 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo271184 No alias No description available 0.04 OrthoFinder output from all 47 species
Solyc02g070800.2.1 Solyc02g070800 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g21936 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g03807 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e032440_P001 Zm00001e032440 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR007570 Uncharacterised_Ycf23 74 305
No external refs found!