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  5. Sacu_v1.1_s0181.g024872

Sacu_v1.1_s0181.g024872


Description : not classified & original description: CDS=482-2332


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0181.g024872

Target Alias Description ECC score Gene Family Method Actions
Ala_g04623 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g33584 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0021.g015678 No alias not classified & original description: CDS=199-2262 0.03 OrthoFinder output from all 47 species
Azfi_s0076.g037780 No alias not classified & original description: CDS=1-1272 0.03 OrthoFinder output from all 47 species
Dcu_g51304 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10433202g0030 ATPI4K ALPHA Phosphatidylinositol 4-kinase alpha 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_479847g0010 No alias C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Ore_g31565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09058 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e039148_P001 Zm00001e039148 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 216 236
IPR025605 OST-HTH/LOTUS_dom 289 366
IPR000504 RRM_dom 406 459
No external refs found!