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  5. Sacu_v1.1_s0180.g024789

Sacu_v1.1_s0180.g024789


Description : pre-40S ribosomal subunit assembly factor *(UTP22) & original description: CDS=1-3183


Gene families : OG0006078 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006078_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0180.g024789

Target Alias Description ECC score Gene Family Method Actions
Ceric.24G063300.1 Ceric.24G063300 pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020544.6 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre07.g332800 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g25897 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.02 OrthoFinder output from all 47 species
Dde_g19844 No alias pre-40S ribosomal subunit assembly factor *(UTP22) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01018952001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os12g06910.1 LOC_Os12g06910 pre-40S ribosomal subunit assembly factor (UTP22) 0.03 OrthoFinder output from all 47 species
MA_10427874g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000387 spliceosomal snRNP assembly IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR035082 Nrap_D1 71 207
IPR035369 Nrap_D4 535 729
IPR035367 Nrap_D2 211 353
IPR035370 Nrap_D5 733 885
IPR035368 Nrap_D3 359 513
IPR035371 Nrap_D6 901 1056
No external refs found!