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  5. Sacu_v1.1_s0178.g024723

Sacu_v1.1_s0178.g024723


Description : not classified & original description: CDS=1-3261


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0178.g024723
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00191560 OTP82,... Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
Adi_g005657 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g09730 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g22656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09402 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g09092 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g36807 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g43404 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g63229 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene34514.t1 Aspi01Gene34514 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene54997.t1 CRK8, Aspi01Gene54997 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene67071.t1 Aspi01Gene67071 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene72349.t1 EMB2758, Aspi01Gene72349 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009069 CRR22 not classified & original description: CDS=1-1992 0.05 OrthoFinder output from all 47 species
Azfi_s0117.g046569 No alias not classified & original description: CDS=1-2520 0.05 OrthoFinder output from all 47 species
Azfi_s0544.g076391 No alias not classified & original description: CDS=1-906 0.05 OrthoFinder output from all 47 species
Azfi_s1396.g102567 No alias not classified & original description: CDS=1-1371 0.05 OrthoFinder output from all 47 species
Cba_g11527 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g20881 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g35519 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g72718 MEF21 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G023600.1 Ceric.09G023600 not classified & original description: pacid=50587368... 0.04 OrthoFinder output from all 47 species
Ceric.15G051800.1 VAC1, ECB2,... not classified & original description: pacid=50639747... 0.04 OrthoFinder output from all 47 species
Ceric.18G001000.1 Ceric.18G001000 not classified & original description: pacid=50621627... 0.05 OrthoFinder output from all 47 species
Ceric.18G049200.1 Ceric.18G049200 not classified & original description: pacid=50621468... 0.04 OrthoFinder output from all 47 species
Ceric.1Z242100.1 CRR22, Ceric.1Z242100 not classified & original description: pacid=50573437... 0.04 OrthoFinder output from all 47 species
Ceric.21G004000.1 Ceric.21G004000 not classified & original description: pacid=50604228... 0.04 OrthoFinder output from all 47 species
Ceric.26G046300.1 Ceric.26G046300 not classified & original description: pacid=50599602... 0.04 OrthoFinder output from all 47 species
Ceric.38G035700.1 Ceric.38G035700 not classified & original description: pacid=50579678... 0.05 OrthoFinder output from all 47 species
Ceric.39G053500.1 Ceric.39G053500 not classified & original description: pacid=50582600... 0.04 OrthoFinder output from all 47 species
Dac_g32204 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g40749 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g05493 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g14626 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g36025 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g45110 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g45756 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_18015 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
Gb_33693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Msp_g04475 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28474 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06375 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56659 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g22788 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g07289 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g28071 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 397 419
IPR002885 Pentatricopeptide_repeat 599 622
IPR002885 Pentatricopeptide_repeat 196 221
IPR002885 Pentatricopeptide_repeat 701 724
IPR002885 Pentatricopeptide_repeat 903 927
IPR002885 Pentatricopeptide_repeat 223 251
IPR002885 Pentatricopeptide_repeat 527 556
IPR002885 Pentatricopeptide_repeat 802 824
IPR002885 Pentatricopeptide_repeat 931 958
IPR002885 Pentatricopeptide_repeat 498 520
IPR002885 Pentatricopeptide_repeat 426 455
IPR002885 Pentatricopeptide_repeat 18 42
IPR002885 Pentatricopeptide_repeat 730 759
IPR002885 Pentatricopeptide_repeat 322 368
IPR002885 Pentatricopeptide_repeat 625 671
IPR002885 Pentatricopeptide_repeat 118 165
No external refs found!