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  5. Sacu_v1.1_s0175.g024570

Sacu_v1.1_s0175.g024570


Description : TCP-type transcription factor & original description: CDS=1-1014


Gene families : OG0000443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000443_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0175.g024570
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00081210 AT-TCP20, TCP20,... RNA biosynthesis.transcriptional activation.TCP... 0.02 OrthoFinder output from all 47 species
AMTR_s00017p00035550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00040760 evm_27.TU.AmTr_v1... Multi-process regulation.circadian clock.morning element... 0.03 OrthoFinder output from all 47 species
AT3G47620 AtTCP14, TCP14 TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 0.03 OrthoFinder output from all 47 species
Adi_g040816 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069116 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06733 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22689 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07321 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010337 AtTCP14, TCP14 TCP-type transcription factor & original description: CDS=1-2394 0.04 OrthoFinder output from all 47 species
Dac_g02339 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g33873 AT-TCP20, TCP20,... TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07622 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26686 AT-TCP20, TCP20,... TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019876001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.02 OrthoFinder output from all 47 species
GSVIVT01026145001 No alias Multi-process regulation.circadian clock.morning element... 0.04 OrthoFinder output from all 47 species
Lfl_g32671 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428794g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_16752g0010 No alias transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
MA_635g0010 AtTCP14, TCP14 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
MA_81710g0010 No alias transcription factor (TCP) 0.05 OrthoFinder output from all 47 species
MA_96244g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp7g09490.1 No alias transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Msp_g10117 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g35770 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05851 No alias TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g01518 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03168 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07074 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25887 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25970 No alias TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g40661 No alias circadian clock activation factor *(TCP20) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g02433 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Smo438214 No alias RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
Solyc03g006800.1.1 Solyc03g006800 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc08g080150.1.1 Solyc08g080150 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc09g008030.1.1 Solyc09g008030 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Zm00001e015209_P001 Zm00001e015209 transcription factor (TCP). CHE circadian clock repression factor 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 113 193
No external refs found!