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  5. Sacu_v1.1_s0174.g024533

Sacu_v1.1_s0174.g024533 (PHIP1)


Aliases : PHIP1

Description : phragmoplastin-interacting factor *(PHIP1) & original description: CDS=125-1438


Gene families : OG0002968 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002968_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0174.g024533
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AT3G55340 PHIP1 phragmoplastin interacting protein 1 0.03 OrthoFinder output from all 47 species
Adi_g088433 PHIP1 phragmoplastin-interacting factor *(PHIP1) & original... 0.02 OrthoFinder output from all 47 species
Aob_g05162 PHIP1 phragmoplastin-interacting factor *(PHIP1) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000441.24 No alias Nucleolin 1 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
Cre10.g466450 No alias No description available 0.05 OrthoFinder output from all 47 species
LOC_Os03g03140.1 PHIP1, LOC_Os03g03140 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g24090.1 PHIP1 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 324 391
IPR000504 RRM_dom 222 290
No external refs found!